D. D'amours, S. Desnoyers, I. Silva, and G. G. Poirier, Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions, Biochem. J, vol.342, pp.249-268, 1999.

J. C. Ame, C. Spenlehauer, and G. De-murcia, The PARP superfamily. Bioessays, vol.26, pp.882-893, 2004.

V. Schreiber, F. Dantzer, J. C. Ame, and G. De-murcia, Poly(ADP-ribose): novel functions for an old molecule, Nat. Rev. Mol. Cell Biol, vol.7, pp.517-528, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00129983

J. Yelamos, V. Schreiber, and F. Dantzer, Toward specific functions of poly(ADP-ribose) polymerase-2, Trends Mol. Med, vol.14, pp.169-178, 2008.

T. Lindahl, M. S. Satoh, G. G. Poirier, and A. Klungland, Post-translational modification of poly(ADP-ribose) polymerase induced by DNA strand breaks, Trends Biochem. Sci, vol.20, pp.405-411, 1995.

M. S. Satoh, G. G. Poirier, and T. Lindahl, NAD(+)-dependent repair of damaged DNA by human cell extracts, J. Biol. Chem, vol.268, pp.5480-5487, 1993.

C. Niedergang, C. Trucco, E. Flatter, G. De-la-rubia, J. Oliver et al., Involvement of poly(ADP-ribose) polymerase in base excision repair, Biochimie, vol.81, pp.69-75, 1999.

V. Schreiber, J. C. Amé, P. Dollé, I. Schultz, B. Rinaldi et al., Poly(ADP-ribose) polymerase-2 (PARP-2) is required for efficient base excision DNA repair in association with PARP-1 and XRCC1, J. Biol. Chem, vol.21, pp.23028-23036, 2002.

J. C. Ame, V. Rolli, V. Schreiber, C. Niedergang, F. Apiou et al., PARP-2, a novel mammalian DNA damage dependent poly(ADP-ribose) polymerase, J. Biol. Chem, vol.274, pp.17860-17868, 1999.

V. Schreiber, M. Ricoul, J. C. Amé, F. Dantzer, V. Meder et al., PARP-2, structure-function relationship, pp.13-31, 2006.

E. Pion, G. M. Ullmann, J. C. Amé, D. Gérard, G. De-murcia et al., DNA-induced dimerization of poly(ADP-ribose)polymerase-1 triggers its activation, Biochemistry, vol.44, pp.14670-14681, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00129960

I. D'silva, J. D. Pelletier, J. Lagueux, D. D'amours, M. A. Chaudhry et al., Relative affinities of poly(ADP-ribose) polymerase and DNA-dependent protein kinase for DNA strand interruptions, Biochim. Biophys. Acta, pp.119-126, 1430.

M. M. Kutuzov, S. N. Khodyreva, J. C. Ame, E. S. Ilina, M. V. Sukhanova et al., Interaction of PARP-2 with DNA structures mimicking DNA repair intermediates and consequences on activity of base excision repair proteins, Biochimie, vol.95, pp.1208-1215, 2013.

M. F. Langelier, A. A. Riccio, and J. M. Pascal, PARP-2 and PARP-3 are selectively activated by 5 phosphorylated DNA breaks through an allosteric regulatory mechanism shared with PARP-1, Nucleic Acids Res, vol.42, pp.7762-7775, 2014.

I. Lonskaya, V. N. Potaman, L. S. Shlyakhtenko, E. A. Oussatcheva, Y. L. Lyubchenko et al., Regulation of poly(ADP-ribose) polymerase-1 by DNA structure-specific binding, J. Biol. Chem, vol.280, pp.17076-17083, 2005.

O. I. Lavrik, R. Prasad, R. W. Sobol, J. K. Horton, E. J. Ackerman et al., Photoaffinity labeling of mouse fibroblast enzymes by a base excision repair intermediate, J. Biol. Chem, vol.276, pp.25541-25548, 2001.

M. Sukhanova, S. Khodyreva, and O. Lavrik, Poly(ADP-ribose) polymerase 1 regulates activity of DNA polymerase in long patch base excision repair, Mutat. Res, vol.685, pp.80-89, 2010.

J. C. Ame, T. Kalisch, F. Dantzer, and V. Schreiber, Purification of recombinant poly(ADP-ribose) polymerases, Methods Mol. Biol, vol.780, pp.135-152, 2011.

M. V. Sukhanova, S. N. Khodyreva, and O. I. Lavrik, Poly(ADP-ribose) polymerase-1 inhibits strand-displacement synthesis of DNA catalyzed by DNA polymerase beta, Biochemistry (Mosc.), vol.69, pp.558-568, 2004.

B. Revet and A. Fourcade, Short unligated sticky ends enable the observation of circularised DNA by atomic force and electron microscopies, Nucleic Acids Res, vol.26, pp.2092-2097, 1998.

Y. Yang, L. E. Sass, C. Du, P. Hsieh, and D. A. Erie, Determination of protein-DNA binding constants and specificities from statistical analyses of single molecules: MutS-DNA interactions, Nucleic Acids Res, vol.33, pp.4322-4334, 2005.

A. Engel and D. J. Müller, Observing single biomolecules at work with the atomic force microscope, Nat. Struct. Biol, vol.7, pp.715-718, 2000.

Y. L. Lyubchenko, A. A. Gall, and L. S. Shlyakhtenko, Visualization of DNA and protein-DNA complexes with atomic force microscopy, Methods Mol. Biol, vol.1117, pp.367-384, 2014.

C. Bustamante and C. Rivetti, Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope, Annu. Rev. Biophys. Biomol. Struct, vol.25, pp.395-429, 1996.

D. Pastre, L. Hamon, I. Sorel, E. Le-cam, P. A. Curmi et al., Specific DNA-protein interactions on mica investigated by atomic force microscopy, Langmuir, vol.26, pp.2618-2623, 2010.

D. Pastre, L. Hamon, F. Landousy, I. Sorel, M. O. David et al., Anionic polyelectrolyte adsorption on mica mediated by multivalent cations: a solution to DNA imaging by atomic force microscopy under high ionic strengths, Langmuir, vol.22, pp.6651-6660, 2006.

L. Hamon, D. Pastre, P. Dupaigne, C. Le-breton, E. Le-cam et al., High-resolution AFM imaging of single-stranded DNA-binding (SSB) protein-DNA complexes, Nucleic Acids Res, vol.35, p.58, 2007.

H. G. Hansma and D. E. Laney, DNA binding to mica correlates with cationic radius: assay by atomic force microscopy, Biophys. J, vol.70, pp.1933-1939, 1996.

W. X. Shi and R. G. Larson, Atomic force microscopic study of aggregation of RecA-DNA nucleoprotein filaments into left-handed supercoiled bundles, Nano Lett, vol.5, pp.2476-2481, 2005.

D. Ristic, M. Modesti, T. Van-der-heijden, J. Van-noort, C. Dekker et al., Human Rad51 filaments on doubleand single-stranded DNA: correlating regular and irregular forms with recombination function, Nucleic Acids Res, vol.33, pp.3292-3302, 2005.

W. Hoyer, D. Cherny, V. Subramaniam, and T. M. Jovin, Rapid self-assembly of alpha-synuclein observed by in situ atomic force microscopy, J. Mol. Biol, vol.340, pp.127-139, 2004.

M. Wang, W. Wu, B. Rosidi, L. Zhang, H. Wang et al., PARP-1 and Ku compete for repair of DNA double strand breaks by distinct NHEJ pathways, Nucleic Acids Res, vol.34, pp.6170-6182, 2006.

W. Y. Mansour, T. Rhein, and J. Dahm-daphi, The alternative end-joining pathway for repair of DNA double-strand breaks requires PARP1 but is not dependent upon microhomologies, Nucleic Acids Res, vol.38, pp.6065-6077, 2010.

C. Beck, I. Robert, B. Reina-san-martin, V. Schreiber, and F. Dantzer, Poly(ADP-ribose) polymerases in double-strand break repair: focus on PARP1, PARP2 and PARP3, Exp. Cell Res, vol.329, pp.18-25, 2014.

R. C. Benjamin and D. M. Gill, Poly(ADP-ribose) synthesis in vitro programmed by damaged DNA. A comparison of DNA molecules containing different types of strand breaks, J. Biol. Chem, vol.255, pp.10502-10508, 1980.

C. Hengartner, J. Lagueux, and G. G. Poirier, Analysis of the activation of poly(ADP-ribose) polymerase by various types of DNA, Biochem. Cell Biol, vol.69, pp.577-580, 1991.

D. A. Wacker, D. D. Ruhl, E. H. Balagamwala, K. M. Hope, T. Zhang et al., The DNA binding and catalytic domains of poly(ADP-ribose) polymerase 1 cooperate in the regulation of chromatin structure and transcription, Mol. Cell Biol, vol.27, pp.7475-7485, 2007.

J. M. De-murcia, C. Niedergang, C. Trucco, M. Ricoul, B. Dutrillaux et al., Requirement of poly(ADP-ribose) polymerase in recovery from DNA damage in mice and in cells, Proc. Natl. Acad. Sci. U.S.A, vol.94, pp.7303-7307, 1997.

, Nucleic Acids Research, vol.44, issue.6, 2016.

S. N. Khodyreva, R. Prasad, E. S. Ilina, M. V. Sukhanova, M. M. Kutuzov et al., Apurinic/apyrimidinic (AP) site recognition by the 5 -dRP/AP lyase in poly(ADP-ribose) polymerase-1 (PARP-1), Proc. Natl. Acad. Sci. U.S.A, vol.107, pp.22090-22095, 2010.

J. L. Parsons and G. L. Dianov, Monitoring base excision repair proteins on damaged DNA using human cell extracts, Biochem. Soc. Trans, vol.32, pp.962-963, 2004.

J. L. Parsons, I. I. Dianova, S. L. Allinson, and G. L. Dianov, Poly(ADP-ribose) polymerase-1 protects excessive DNA strand breaks from deterioration during repair in human cell extracts, FEBS J, vol.272, pp.2012-2021, 2005.

M. E. Smulson, D. Pang, M. Jung, A. Dimtchev, S. Chasovskikh et al., Irreversible binding of poly(ADP)ribose polymerase cleavage product to DNA ends revealed by atomic force microscopy: possible role in apoptosis, Cancer Res, vol.58, pp.3495-3498, 1998.

S. Chasovskikh, A. Dimtchev, M. Smulson, and A. Dritschilo, DNA transitions induced by binding of PARP-1 to cruciform structures in supercoiled plasmids, Cytometry, vol.68, pp.21-27, 2005.

V. A. Soldatenkov, S. Chasovskikh, V. N. Potaman, I. Trofimova, M. E. Smulson et al., Transcriptional repression by binding of poly(ADP-ribose) polymerase to promoter sequences, J. Biol. Chem, vol.277, pp.665-670, 2002.

V. N. Potaman, L. S. Shlyakhtenko, E. A. Oussatcheva, Y. L. Lyubchenko, and V. A. Soldatenkov, Specific binding of poly(ADP-ribose) polymerase-1 to cruciform hairpins, J. Mol. Biol, vol.348, pp.609-615, 2005.

A. Tulin and A. Spradling, Chromatin loosening by poly(ADP)-ribose polymerase (PARP) at Drosophila puff loci, Science, vol.299, pp.560-562, 2003.