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Sequential reprogramming of biological network fate

Abstract : Network controllability is a major challenge in network medicine. The problem is to rewire the molecular network for reprogramming the cell fate. The reprogramming action is considered as a control usually performed once. However, in some cases, a therapy has to follow a time-scheduled drug administration protocol. Furthermore, some diseases are induced by a sequence of mutations leading to a sequence of actions on molecules. In this paper, we extend the single control action method by investigating the sequential control of Boolean networks. We present a novel theoretical framework for formal study of control sequences, leading to algorithms resolving the PSPACE-hard problem of inferring minimal parsimonious control sequences under the synchronous dynamics.
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https://hal.archives-ouvertes.fr/hal-03180429
Contributor : Frédéric Davesne Connect in order to contact the contributor
Submitted on : Thursday, March 25, 2021 - 9:21:29 AM
Last modification on : Thursday, February 10, 2022 - 11:48:03 PM

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Jérémie Pardo, Sergiu Ivanov, Franck Delaplace. Sequential reprogramming of biological network fate. Theoretical Computer Science, Elsevier, 2021, 872, pp.97--116. ⟨10.1016/j.tcs.2021.03.013⟩. ⟨hal-03180429⟩

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